Systematic review of reconstruction techniques for accelerated quantitative MRI

B. Shafieizargar| R. Byanju | J. Sijbers | S. Klein | A. J. den Dekker | D. H. J. Poot

4.1 Indirect reconstruction

4.1.1 Image reconstruction

4.1.1.1. Multi-contrast PI

Title	Link to data	Link to code
Streamlined magnetic resonance fingerprinting: Fast whole-brain coverage with deep-learning based parameter estimation	NA	Code

4.1.1.2. Regularized reconstruction

Incorporation of prior knowledge of signal behavior into the reconstruction to accelerate the acquisition of diffusion MRI data	NA	Code
Multi T1-weighted contrast imaging and T1 mapping with Compressed sensing FLAWS at 3T	NA	Code
High-dimensionality undersampled patch-based reconstruction (HD-PROST) for accelerated multi-contrast MRI	NA	Code
Multi-shot diffusion-weighted MRI reconstruction with magnitude-based spatial-angular locally low-rank regularization (SPA-LLR)	NA	Code
Multishot Diffusion-Weighted MRI of the Breast With Multiplexed Sensitivity Encoding (MUSE) and Shot Locally Low-Rank (Shot-LLR) Reconstructions	NA	Code
Accelerating cardiac diffusion tensor imaging combining local low-rank and 3D TV constraint	Data	NA
Low-rank magnetic resonance fingerprinting	NA	Code
Motion-corrected and high-resolution anatomically assisted (MOCHA) reconstruction of arterial spin labeling MRI	NA	Code
Accelerating t1ρ cartilage imaging using compressed sensing with iterative locally adapted support detection and JSENSE	NA	Code

4.1.1.3. Subspace constrained reconstruction

Low rank alternating direction method of multipliers reconstruction for MR fingerprinting	NA	Code
Highly accelerated multishot echo planar imaging through synergistic machine learning and joint reconstruction	Data	Code
Echo planar time-resolved imaging with Subspace constrained reconstruction and optimized spatiotemporal encoding	NA	Code1 Code2
Variable flip angle echo planar time-resolved imaging (vFA-EPTI) for fast high-resolution gradient echo myelin water imaging	Data	Code
CoverBLIP: accelerated and scalable iterative matched-filtering for magnetic resonance fingerprint reconstruction	NA	Code
Compressive MRI quantification using convex spatiotemporal priors and deep encoder-decoder networks	NA	Code
Acceleration of MR parameter mapping using annihilating filter-based low rank hankel matrix (ALOHA)	NA	Code
Low-rank inversion reconstruction for through-plane accelerated radial MR fingerprinting applied to relaxometry at 0.35 T	Data	Code
Using a local low rank plus sparse reconstruction to accelerate dynamic hyperpolarized 13C imaging using the bSSFP sequence	NA	Code
Joint T1 and T2 Mapping With Tiny Dictionaries and Subspace constrained-Constrained Reconstruction	Data	Code
3D Echo Planar Time-resolved Imaging (3D-EPTI) for ultrafast multi-parametric quantitative MRI	Data	Code
An MR fingerprinting approach for quantitative inhomogeneous magnetization transfer imaging	NA	Code
Blip up-down acquisition for spin- and gradient-echo imaging (BUDA-SAGE) with self-supervised denoising enables efficient T2, T2*, para- and dia-magnetic susceptibility mapping	Data	Code
Cramér–Rao bound-informed training of neural networks for quantitative MRI	NA	Code
Improved magnetic resonance fingerprinting reconstruction with low-rank and Subspace constrained modeling	NA	Code

4.1.1.4. View-sharing reconstruction

Title	Link to data	Link to code
Accelerated magnetic resonance fingerprinting using soft-weighted key-hole (MRF-SOHO)	Data	NA

4.1.1.5. Learning-based reconstruction

Modl-mussels: Model-based deep learning for multishot sensitivity-encoded diffusion mri	Data	Code
Accelerating quantitative susceptibility and R2* mapping using incoherent undersampling and deep neural network reconstruction	NA	Code
RUN-UP: Accelerated multishot diffusion-weighted MRI reconstruction using an unrolled network with U-Net as priors	NA	Code

4.1.2 Parameter estimation

4.1.2.1. Dictionary matching

Title	Link to data	Link to code
Low rank alternating direction method of multipliers reconstruction for MR fingerprinting	NA	Code
Rapid and accurate T2 mapping from multi–spin‐echo data using Bloch‐simulation‐based reconstruction	NA	Code
High-dimensionality undersampled patch-based reconstruction (HD-PROST) for accelerated multi-contrast MRI	NA	Code
Accelerated magnetic resonance fingerprinting using soft-weighted key-hole (MRF-SOHO)	Data	NA
CoverBLIP: accelerated and scalable iterative matched-filtering for magnetic resonance fingerprint reconstruction	NA	Code
Phase unwinding for dictionary compression with multiple channel transmission in magnetic resonance fingerprinting	NA	Code
Low-rank magnetic resonance fingerprinting	NA	Code
Low-rank inversion reconstruction for through-plane accelerated radial MR fingerprinting applied to relaxometry at 0.35 T	Data	Code
Fast multi-component analysis using a joint sparsity constraint for MR fingerprinting	NA	Code
An Efficient Method for Multi-Parameter Mapping in Quantitative MRI Using B-Spline Interpolation	NA	Code
3D Echo Planar Time-resolved Imaging (3D-EPTI) for ultrafast multi-parametric quantitative MRI	Data	Code
An MR fingerprinting approach for quantitative inhomogeneous magnetization transfer imaging	NA	Code
Improved magnetic resonance fingerprinting reconstruction with low-rank and Subspace constrained modeling	NA	Code

4.1.2.2. Learning-based estimation

Title	Link to data	Link to code
Spatially regularized parametric map reconstruction for fast magnetic resonance fingerprinting	NA	Code
Quantification of relaxation times in MR Fingerprinting using deep learning	NA	Code
Compressive MRI quantification using convex spatiotemporal priors and deep encoder-decoder networks	NA	Code
Streamlined magnetic resonance fingerprinting: Fast whole-brain coverage with deep-learning based parameter estimation	NA	Code
Cramér–Rao bound-informed training of neural networks for quantitative MRI	NA	Code

4.2 Direct reconstruction

4.2.1 Direct model-based reconstruction

Title	Link to data	Link to code
Accelerated and motion-robust in vivo T2 mapping from radially undersampled data using bloch-simulation-based iterative reconstruction	NA	Code
Stochastic Gradient Langevin dynamics for joint parameterization of tracer kinetic models, input functions, and T1 relaxation-times from undersampled k-space DCE-MRI	NA	Code
Accelerated MRI thermometry by direct estimation of temperature from undersampled k-space data	NA	Code
Direct estimation of tracer-kinetic parameter maps from highly undersampled brain dynamic contrast enhanced MRI	Data	Code
Embedded Quantitative MRI T1rho Mapping Using Non-Linear Primal-Dual Proximal Splitting	Data	Code
Rapid T1 quantification from high resolution 3D data with model-based reconstruction	NA	Code
Fast T2 mapping with improved accuracy using undersampled spin-echo MRI and model-based reconstructions with a generating function	NA	Code
Model-based acceleration of Look-Locker T1 mapping	Data	Code
Model-based myocardial T1 mapping with sparsity constraints using single-shot inversion-recovery radial FLASH cardiovascular magnetic resonance	NA	Code
Model-based reconstruction for simultaneous multi-slice T1 mapping using single-shot inversion-recovery radial FLASH	Data	Code
Sparse precontrast T1 mapping for high-resolution whole-brain DCE-MRI	Data	Code